Modern-day SIV viral diversity generated by extensive recombination and cross-species transmission
Identifieur interne : 000C74 ( Main/Exploration ); précédent : 000C73; suivant : 000C75Modern-day SIV viral diversity generated by extensive recombination and cross-species transmission
Auteurs : Sidney M. Bell [États-Unis] ; Trevor Bedford [États-Unis]Source :
- PLoS Pathogens [ 1553-7366 ] ; 2017.
Abstract
Cross-species transmission (CST) has led to many devastating epidemics, but is still a poorly understood phenomenon. HIV-1 and HIV-2 (human immunodeficiency virus 1 and 2), which have collectively caused over 35 million deaths, are the result of multiple CSTs from chimpanzees, gorillas, and sooty mangabeys. While the immediate history of HIV is known, there are over 45 lentiviruses that infect specific species of primates, and patterns of host switching are not well characterized. We thus took a phylogenetic approach to better understand the natural history of SIV recombination and CST. We modeled host species as a discrete character trait on the viral phylogeny and inferred historical host switches and the pairwise transmission rates between each pair of 24 primate hosts. We identify 14 novel, well-supported, ancient cross-species transmission events. We also find that lentiviral lineages vary widely in their ability to infect new host species: SIV
Url:
DOI: 10.1371/journal.ppat.1006466
PubMed: 28672035
PubMed Central: 5510905
Affiliations:
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Bell</name><affiliation wicri:level="2"><nlm:aff id="aff001"><addr-line>Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, Washington</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation><affiliation wicri:level="4"><nlm:aff id="aff002"><addr-line>Molecular and Cellular Biology Program, University of Washington, Seattle, Washington, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Molecular and Cellular Biology Program, University of Washington, Seattle, Washington</wicri:regionArea><placeName><region type="state">Washington (État)</region><settlement type="city">Seattle</settlement></placeName><orgName type="university">Université de Washington</orgName></affiliation></author><author><name sortKey="Bedford, Trevor" sort="Bedford, Trevor" uniqKey="Bedford T" first="Trevor" last="Bedford">Trevor Bedford</name><affiliation wicri:level="2"><nlm:aff id="aff001"><addr-line>Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, Washington</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">28672035</idno><idno type="pmc">5510905</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5510905</idno><idno type="RBID">PMC:5510905</idno><idno type="doi">10.1371/journal.ppat.1006466</idno><date when="2017">2017</date><idno type="wicri:Area/Pmc/Corpus">001104</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">001104</idno><idno type="wicri:Area/Pmc/Curation">001104</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">001104</idno><idno type="wicri:Area/Pmc/Checkpoint">000775</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000775</idno><idno type="wicri:Area/Ncbi/Merge">001A97</idno><idno type="wicri:Area/Ncbi/Curation">001A97</idno><idno type="wicri:Area/Ncbi/Checkpoint">001A97</idno><idno type="wicri:doubleKey">1553-7366:2017:Bell S:modern:day:siv</idno><idno type="wicri:Area/Main/Merge">000C77</idno><idno type="wicri:Area/Main/Curation">000C74</idno><idno type="wicri:Area/Main/Exploration">000C74</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Modern-day SIV viral diversity generated by extensive recombination and cross-species transmission</title><author><name sortKey="Bell, Sidney M" sort="Bell, Sidney M" uniqKey="Bell S" first="Sidney M." last="Bell">Sidney M. Bell</name><affiliation wicri:level="2"><nlm:aff id="aff001"><addr-line>Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, Washington</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation><affiliation wicri:level="4"><nlm:aff id="aff002"><addr-line>Molecular and Cellular Biology Program, University of Washington, Seattle, Washington, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Molecular and Cellular Biology Program, University of Washington, Seattle, Washington</wicri:regionArea><placeName><region type="state">Washington (État)</region><settlement type="city">Seattle</settlement></placeName><orgName type="university">Université de Washington</orgName></affiliation></author><author><name sortKey="Bedford, Trevor" sort="Bedford, Trevor" uniqKey="Bedford T" first="Trevor" last="Bedford">Trevor Bedford</name><affiliation wicri:level="2"><nlm:aff id="aff001"><addr-line>Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, Washington</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation></author></analytic><series><title level="j">PLoS Pathogens</title><idno type="ISSN">1553-7366</idno><idno type="eISSN">1553-7374</idno><imprint><date when="2017">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Cross-species transmission (CST) has led to many devastating epidemics, but is still a poorly understood phenomenon. HIV-1 and HIV-2 (human immunodeficiency virus 1 and 2), which have collectively caused over 35 million deaths, are the result of multiple CSTs from chimpanzees, gorillas, and sooty mangabeys. While the immediate history of HIV is known, there are over 45 lentiviruses that infect specific species of primates, and patterns of host switching are not well characterized. We thus took a phylogenetic approach to better understand the natural history of SIV recombination and CST. We modeled host species as a discrete character trait on the viral phylogeny and inferred historical host switches and the pairwise transmission rates between each pair of 24 primate hosts. We identify 14 novel, well-supported, ancient cross-species transmission events. We also find that lentiviral lineages vary widely in their ability to infect new host species: SIV<italic>col</italic> (from colobus monkeys) is evolutionarily isolated, while SIV<italic>agm</italic>s (from African green monkeys) frequently move between host subspecies. We also examine the origins of SIV<italic>cpz</italic> (the predecessor of HIV-1) in greater detail than previous studies, and find that there are still large portions of the genome with unknown origins. Observed patterns of CST are likely driven by a combination of ecological circumstance and innate immune factors.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Morens, D" uniqKey="Morens D">D Morens</name></author><author><name sortKey="Folkers, G" uniqKey="Folkers G">G Folkers</name></author><author><name sortKey="Fauci, A" uniqKey="Fauci A">A Fauci</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Parrish, Cr" uniqKey="Parrish C">CR Parrish</name></author><author><name sortKey="Holmes, Ec" uniqKey="Holmes E">EC Holmes</name></author><author><name sortKey="Morens, Dm" uniqKey="Morens D">DM Morens</name></author><author><name sortKey="Park, E C" uniqKey="Park E">E-C Park</name></author><author><name sortKey="Burke, Ds" uniqKey="Burke D">DS Burke</name></author><author><name sortKey="Calisher, Ch" uniqKey="Calisher C">CH 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name="Washington (État)"><name sortKey="Bell, Sidney M" sort="Bell, Sidney M" uniqKey="Bell S" first="Sidney M." last="Bell">Sidney M. Bell</name></region><name sortKey="Bedford, Trevor" sort="Bedford, Trevor" uniqKey="Bedford T" first="Trevor" last="Bedford">Trevor Bedford</name><name sortKey="Bell, Sidney M" sort="Bell, Sidney M" uniqKey="Bell S" first="Sidney M." last="Bell">Sidney M. Bell</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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